Page 23 - Tequio 11
P. 23

Filogenia: conceptos y generalidades/Leopardi-Verde & Escobedo-Sarti/7-25  21






                Referencias
                Alfaro, M. E., Zoller, S. & Lutzoni, F. (2003). Bayes or bootstrap? a simulation study comparing the performance of
                        Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence.
                        Molecular Biology and Evolution, 20(2), 255-266. doi: 10.1093/molbev/msg028

                Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., … Drummond, A. J.
                        (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLOS Computa-
                        tional Biology, 15(4), e1006650. doi: 10.1371/journal.pcbi.1006650

                Bromham, L. & Penny, D. (2003). The modern molecular clock. Nature Reviews Genetics, 4(3), 216-224. doi:
                        10.1038/nrg1020

                Bryan, H. N. (2001). Character polarity and the rooting of cladograms. En G. P. Wagner (Ed.), The Character Con-
                        cept in Evolutionary Biology (319-341). San Diego, Estados Unidos: Academic Press.

                Chan, J. M., Carlsson, G. & Rabadan, R. (2013). Topology of viral evolution. Proceedings of the National Academy
                        of Sciences, 110(46), 18566-18571. doi: 10.1073/pnas.1313480110

                Czislowski, E., Fraser-Smith, S., Zander, M., O’Neill, W. T., Meldrum, R. A., Tran-Nguyen, L. T. T., Batley, J. & Aitken,
                        E. A. B. (2018). Investigation of the diversity of effector genes in the banana pathogen, Fusarium ox-
                        ysporum f. sp. cubense, reveals evidence of horizontal gene transfer. Molecular Plant Pathology, 19(5),
                        1155-1171. doi: 10.1111/mpp.12594
                Darriba, D., Posada, D., Kozlov, A. M., Stamatakis, A., Morel, B. & Flouri, T. (2019). ModelTest-NG: A new and scal-
                        able tool for the selection of DNA and protein evolutionary models. Molecular Biology and Evolution,
                        37(1), 291-294. doi: 10.1101/612903

                Edgar, R. C. & Batzoglou, S. (2006). Multiple sequence alignment. Current Opinion in Structural Biology 16 (3),
                        368–373. DOI: 10.1016/j.sbi.2006.04.004
                Eldredge, N. & Cracraft, J. (1980). Phylogenetic patterns and the evolutionary process, methods and theory in
                        comparative biology. New York: Columbia University Press.

                Felsenstein,  J.  (1989).  PHYLIP-Phylogeny  Inference  Package  (Version  3.2).  Cladistics  5(2),  164-166.  doi:
                        10.1111/j.1096-0031.1989.tb00562.x
                Forster, P., Forster, L., Renfrew, C. & Forster, M. (2020). Phylogenetic network analysis of SARS-CoV-2 ge-
                        nomes.  Proceedings of the National Academy of Sciences, 117(17),  9241-9243. doi: 10.1073/
                        pnas.2004999117

                García-Cruz, J. & Sosa, V. (2006). Coding quantitative character data for phylogenetic analysis: A comparison of
                        five methods. Systematic Botany, 31(2), 302-309. doi: 10.1600/036364406777585739
                Givnish, T. J., Barfuss, M. H. J., Ee, B. V., Riina, R., Schulte, K., Horres, R., Gonsiska, P. A., Jabaily, R. S., Crayn, D.
                        M., Smith, A. C., Winter, K., Brown, G. K., Evans, T. M., Holst, B. K., Luther, H., Till, W., Zizka, G., Berry, P.
                        E. & Sytsma, K. J. (2011). Phylogeny, adaptive radiation, and historical biogeography in Bromeliace-
                        ae: Insights from an eight-locus plastid phylogeny. American Journal of Botany, 98(5), 872-895. doi:
                        10.3732/ajb.1000059




                                                 Tequio, enero-abril 2021, vol. 4, no. 11
   18   19   20   21   22   23   24   25   26   27   28